SAM (Sequence Alignment/Map) is a flexible generic format for storing
nucleotide sequence alignment.
SAM Tools provide various utilities for manipulating alignments in the
SAM format, including sorting, merging, indexing and generating
alignments in a per-position format.
Update Information:
Update to 1.23.1
* Thu Mar 19 2026 Rasmus Ory Nielsen
[ 1 ] Bug #2448857 - CVE-2026-31972 samtools: SAMtools: Information Disclosure and Denial of Service via use-after-free vulnerability in mpileup command
https://bugzilla.redhat.com/show_bug.cgi?id=2448857
[ 2 ] Bug #2448860 - CVE-2026-31973 samtools: SAMtools: Denial of Service due to NULL pointer dereference in cram-size command
https://bugzilla.redhat.com/show_bug.cgi?id=2448860
This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2026-cb321bebb5' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label
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