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Fedora Update Notification
FEDORA-2024-129d8ca6fc
2024-03-07 22:24:39.963937
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Name        : jni-inchi
Product     : Fedora 40
Version     : 0.8
Release     : 11.fc40
URL         : https://jni-inchi.sourceforge.net/
Summary     : International Chemical Identifiers for Java
Description :
JNI-InChI enables Java software to generate IUPAC's International
Chemical Identifiers (InChIs) by making Java Native Interface (JNI) calls
to the InChI C library developed by IUPAC.  All of the features from the
InChI library are supported:

- Standard and Non-Standard InChI generation from structures with 3D, 2D,
  or no coordinates
- Structure generation (without coordinates) from InChI
- InChIKey generation
- Check InChI / InChIKey
- InChI-to-InChI conversion
- AuxInfo to InChI input
- Access to the full range of options supported by InChI
- Full support for InChI's handling of stereochemistry

JNI-InChI is a library intended for use by developers of other projects.
It does not enable users to generate InChIs from molecule file formats
such as .mol, .cml, .mol2, or SMILES strings.  If you want to do any of
these, you should take a look at the Chemistry Development Kit (CDK) or
JUMBO, both of which include InChI generation powered by JNI-InChI.  If,
however, you are a software developer and you want want to generate the
InChI for a molecule that you already hold in memory, JNI-InChI is what
you need.

--------------------------------------------------------------------------------
Update Information:

Change for system JDK from 17 to 21.
upstream security release 122.0.6261.94
High CVE-2024-1938: Type Confusion in V8
High CVE-2024-1939: Type Confusion in V8
fixed bug with requires
Automatic update for lucene-9.9.2-1.fc40.
bump java source/target to 1.8, fixes 2266639
--------------------------------------------------------------------------------
ChangeLog:

* Sat Mar  2 2024 Jiri Vanek  - 0.8-11
- Rebuilt for java-21-openjdk as system jdk
--------------------------------------------------------------------------------
References:

  [ 1 ] Bug #2123726 - consoleImageViewer crashes at start
        https://bugzilla.redhat.com/show_bug.cgi?id=2123726
  [ 2 ] Bug #2261062 - directory-maven-plugin: FTBFS in Fedora rawhide/f40
        https://bugzilla.redhat.com/show_bug.cgi?id=2261062
  [ 3 ] Bug #2266639 - directory-maven-plugin fails to build with java-21-openjdk
        https://bugzilla.redhat.com/show_bug.cgi?id=2266639
  [ 4 ] Bug #2266934 - CVE-2024-1938 chromium: type confusion [fedora-all]
        https://bugzilla.redhat.com/show_bug.cgi?id=2266934
  [ 5 ] Bug #2266937 - CVE-2024-1939 chromium: type confusion [fedora-all]
        https://bugzilla.redhat.com/show_bug.cgi?id=2266937
  [ 6 ] Bug #2267486 - Include Java 21 as system Java Change in Fedora 40 Beta
        https://bugzilla.redhat.com/show_bug.cgi?id=2267486
--------------------------------------------------------------------------------

This update can be installed with the "dnf" update program. Use
su -c 'dnf upgrade --advisory FEDORA-2024-129d8ca6fc' at the command
line. For more information, refer to the dnf documentation available at
https://dnf.readthedocs.io/en/latest/command_ref.html

All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/security/
--------------------------------------------------------------------------------
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Fedora 40: jni-inchi 2024-129d8ca6fc

March 7, 2024
Change for system JDK from 17 to 21

Summary

JNI-InChI enables Java software to generate IUPAC's International

Chemical Identifiers (InChIs) by making Java Native Interface (JNI) calls

to the InChI C library developed by IUPAC. All of the features from the

InChI library are supported:

- Standard and Non-Standard InChI generation from structures with 3D, 2D,

or no coordinates

- Structure generation (without coordinates) from InChI

- InChIKey generation

- Check InChI / InChIKey

- InChI-to-InChI conversion

- AuxInfo to InChI input

- Access to the full range of options supported by InChI

- Full support for InChI's handling of stereochemistry

JNI-InChI is a library intended for use by developers of other projects.

It does not enable users to generate InChIs from molecule file formats

such as .mol, .cml, .mol2, or SMILES strings. If you want to do any of

these, you should take a look at the Chemistry Development Kit (CDK) or

JUMBO, both of which include InChI generation powered by JNI-InChI. If,

however, you are a software developer and you want want to generate the

InChI for a molecule that you already hold in memory, JNI-InChI is what

you need.

Update Information:

Change for system JDK from 17 to 21. upstream security release 122.0.6261.94 High CVE-2024-1938: Type Confusion in V8 High CVE-2024-1939: Type Confusion in V8 fixed bug with requires Automatic update for lucene-9.9.2-1.fc40. bump java source/target to 1.8, fixes 2266639

Change Log

* Sat Mar 2 2024 Jiri Vanek - 0.8-11 - Rebuilt for java-21-openjdk as system jdk

References

[ 1 ] Bug #2123726 - consoleImageViewer crashes at start https://bugzilla.redhat.com/show_bug.cgi?id=2123726 [ 2 ] Bug #2261062 - directory-maven-plugin: FTBFS in Fedora rawhide/f40 https://bugzilla.redhat.com/show_bug.cgi?id=2261062 [ 3 ] Bug #2266639 - directory-maven-plugin fails to build with java-21-openjdk https://bugzilla.redhat.com/show_bug.cgi?id=2266639 [ 4 ] Bug #2266934 - CVE-2024-1938 chromium: type confusion [fedora-all] https://bugzilla.redhat.com/show_bug.cgi?id=2266934 [ 5 ] Bug #2266937 - CVE-2024-1939 chromium: type confusion [fedora-all] https://bugzilla.redhat.com/show_bug.cgi?id=2266937 [ 6 ] Bug #2267486 - Include Java 21 as system Java Change in Fedora 40 Beta https://bugzilla.redhat.com/show_bug.cgi?id=2267486

Update Instructions

This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2024-129d8ca6fc' at the command line. For more information, refer to the dnf documentation available at https://dnf.readthedocs.io/en/latest/command_ref.html

Severity
Name : jni-inchi
Product : Fedora 40
Version : 0.8
Release : 11.fc40
URL : https://jni-inchi.sourceforge.net/
Summary : International Chemical Identifiers for Java

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